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@@ -1,901 +0,0 @@
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-import json
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-import pandas as pd
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-import numpy as np
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-from nltk.translate.bleu_score import sentence_bleu, SmoothingFunction
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-import argparse
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-import os
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-from sklearn.metrics import classification_report
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-from sklearn import metrics
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-from datetime import datetime
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-import boto3
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-from botocore.exceptions import NoCredentialsError, ClientError
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-from io import TextIOWrapper
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-import zipfile
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-
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-def Levenshtein_Distance(str1, str2):
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- """
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- 计算并返回两个字符串之间的Levenshtein编辑距离。
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-
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- 参数:
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- - str1: 字符串，第一个比较字符串。
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- - str2: 字符串，第二个比较字符串。
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-
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- 返回:
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- - int: str1和str2之间的Levenshtein距离。
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-
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- 方法:
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- - 使用动态规划构建一个矩阵(matrix)，其中matrix[i][j]表示str1的前i个字符和str2的前j个字符之间的Levenshtein距离。
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- - 矩阵的初始值设定为边界情况，即一个字符串与空字符串之间的距离。
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- - 遍历矩阵填充每个格子的值，根据字符是否相等选择插入、删除或替换操作的最小代价。
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- """
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- # 初始化矩阵，大小为(len(str1)+1) x (len(str2)+1)，边界情况下的距离为i和j
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- matrix = [[i + j for j in range(len(str2) + 1)] for i in range(len(str1) + 1)]
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-
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- # 遍历str1和str2的每个字符，更新矩阵中的值
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- for i in range(1, len(str1) + 1):
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- for j in range(1, len(str2) + 1):
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- # 如果当前字符相等，替换代价为0；否则为1
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- d = 0 if (str1[i - 1] == str2[j - 1]) else 1
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- # 更新当前位置的值为从str1[i]转换到str2[j]的最小操作数
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- matrix[i][j] = min(matrix[i - 1][j] + 1, # 删除操作
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- matrix[i][j - 1] + 1, # 插入操作
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- matrix[i - 1][j - 1] + d) # 替换操作
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- # 返回右下角的值，即str1和str2之间的Levenshtein距离
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- return matrix[len(str1)][len(str2)]
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-
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-
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-def bbox_offset(b_t, b_s):
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- """
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- 判断两个边界框（bounding box）之间的重叠程度是否符合给定的标准。
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-
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- 参数:
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- - b_t: 测试文档中的边界框（bbox），格式为(x1, y1, x2, y2)，
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- 其中(x1, y1)是左上角的坐标，(x2, y2)是右下角的坐标。
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- - b_s: 标准文档中的边界框（bbox），格式同上。
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-
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- 返回:
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- - True: 如果两个边界框的重叠面积与两个边界框合计面积的差的比例超过0.95，
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- 表明它们足够接近。
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- - False: 否则，表示两个边界框不足够接近。
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-
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- 注意:
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- - 函数首先计算两个bbox的交集区域，如果这个区域的面积相对于两个bbox的面积差非常大，
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- 则认为这两个bbox足够接近。
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- - 如果交集区域的计算结果导致无效区域（比如宽度或高度为负值），或者分母为0（即两个bbox完全不重叠），
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- 则函数会返回False。
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- """
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-
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- # 分别提取两个bbox的坐标
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- x1_t, y1_t, x2_t, y2_t = b_t
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- x1_s, y1_s, x2_s, y2_s = b_s
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-
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- # 计算两个bbox交集区域的坐标
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- x1 = max(x1_t, x1_s)
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- x2 = min(x2_t, x2_s)
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- y1 = max(y1_t, y1_s)
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- y2 = min(y2_t, y2_s)
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-
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- # 如果计算出的交集区域有效，则计算其面积
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- if x2 > x1 and y2 > y1:
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- area_overlap = (x2 - x1) * (y2 - y1)
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- else:
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- # 交集区域无效，视为无重叠
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- area_overlap = 0
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-
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- # 计算两个bbox的总面积，减去重叠部分避免重复计算
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- area_t = (x2_t - x1_t) * (y2_t - y1_t) + (x2_s - x1_s) * (y2_s - y1_s) - area_overlap
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-
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- # 判断重叠面积是否符合标准
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-
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-
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-# return area_overlap / total_area
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- if area_t-area_overlap==0 or area_overlap/area_t>0.95:
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- return True
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- else:
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- return False
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-
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-
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-def equations_indicator(test_equations_bboxs, standard_equations_bboxs, test_equations, standard_equations):
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- """
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- 根据边界框匹配的方程计算编辑距离和BLEU分数。
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-
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- 参数:
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- - test_equations_bboxs: 测试方程的边界框列表。
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- - standard_equations_bboxs: 标准方程的边界框列表。
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- - test_equations: 测试方程的列表。
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- - standard_equations: 标准方程的列表。
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-
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- 返回:
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- - 一个元组，包含匹配方程的平均Levenshtein编辑距离和BLEU分数。
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- """
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-
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- # 初始化匹配方程列表
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- test_match_equations = []
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- standard_match_equations = []
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-
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- # 匹配方程基于边界框重叠
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- for index, (test_bbox, standard_bbox) in enumerate(zip(test_equations_bboxs, standard_equations_bboxs)):
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- if not (test_bbox and standard_bbox): # 跳过任一空列表
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- continue
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- for i, sb in enumerate(standard_bbox):
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- for j, tb in enumerate(test_bbox):
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- if bbox_offset(sb, tb):
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- standard_match_equations.append(standard_equations[index][i])
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- test_match_equations.append(test_equations[index][j])
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- break # 找到第一个匹配后即跳出循环
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-
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- # 使用Levenshtein距离和BLEU分数计算编辑距离
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- dis = [Levenshtein_Distance(a, b) for a, b in zip(test_match_equations, standard_match_equations) if a and b]
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- # 应用平滑函数计算BLEU分数
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- sm_func = SmoothingFunction().method1
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- bleu = [sentence_bleu([a.split()], b.split(), smoothing_function=sm_func) for a, b in zip(test_match_equations, standard_match_equations) if a and b]
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-
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- # 计算平均编辑距离和BLEU分数，处理空列表情况
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- equations_edit = np.mean(dis) if dis else float('0.0')
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- equations_bleu = np.mean(bleu) if bleu else float('0.0')
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-
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- return equations_edit, equations_bleu
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-
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-def bbox_match_indicator_general(test_bboxs_list, standard_bboxs_list):
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- """
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- 计算边界框匹配指标，支持掉落的表格、图像和文本块。
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- 此版本的函数专注于计算基于边界框的匹配指标，而不涉及标签匹配逻辑。
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-
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- 参数:
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- - test_bboxs: 测试集的边界框列表，按页面组织。
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- - standard_bboxs: 标准集的边界框列表，按页面组织。
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-
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- 返回:
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- - 一个字典，包含准确度、精确度、召回率和F1分数。
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- """
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- # 如果两个列表都完全为空，返回0值指标
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- if all(len(page) == 0 for page in test_bboxs_list) and all(len(page) == 0 for page in standard_bboxs_list):
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- return {'accuracy': 0, 'precision': 0, 'recall': 0, 'f1_score': 0}
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-
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-
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- matched_bbox = []
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- matched_standard_bbox = []
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-
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- for test_page, standard_page in zip(test_bboxs_list, standard_bboxs_list):
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- test_page_bbox, standard_page_bbox = [], []
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- for standard_bbox in standard_page:
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- if len(standard_bbox) != 4:
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- continue
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- matched = False
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- for test_bbox in test_page:
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- if len(test_bbox) == 4 and bbox_offset(standard_bbox, test_bbox):
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- matched = True
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- break
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- test_page_bbox.append(int(matched))
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- standard_page_bbox.append(1)
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-
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- # 后处理以处理多删情况，保持原逻辑不变
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- diff_num = len(test_page) + test_page_bbox.count(0) - len(standard_page)
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- if diff_num > 0:
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- test_page_bbox.extend([1] * diff_num)
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- standard_page_bbox.extend([0] * diff_num)
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-
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- matched_bbox.extend(test_page_bbox)
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- matched_standard_bbox.extend(standard_page_bbox)
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-
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- block_report = {
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- 'accuracy': metrics.accuracy_score(matched_standard_bbox, matched_bbox),
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- 'precision': metrics.precision_score(matched_standard_bbox, matched_bbox, zero_division=0),
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- 'recall': metrics.recall_score(matched_standard_bbox, matched_bbox, zero_division=0),
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- 'f1_score': metrics.f1_score(matched_standard_bbox, matched_bbox, zero_division=0)
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- }
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-
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- return block_report
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-
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-
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-
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-def bbox_match_indicator_dropped_text_block(test_dropped_text_bboxs, standard_dropped_text_bboxs, standard_dropped_text_tag, test_dropped_text_tag):
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- """
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- 计算丢弃文本块的边界框匹配相关指标，包括准确率、精确率、召回率和F1分数，
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- 同时也计算文本块标签的匹配指标。
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-
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- 参数:
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- - test_dropped_text_bboxs: 测试集的丢弃文本块边界框列表
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- - standard_dropped_text_bboxs: 标准集的丢弃文本块边界框列表
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- - standard_dropped_text_tag: 标准集的丢弃文本块标签列表
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- - test_dropped_text_tag: 测试集的丢弃文本块标签列表
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-
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- 返回:
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- - 一个包含边界框匹配指标和文本块标签匹配指标的元组
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- """
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- test_text_bbox, standard_text_bbox = [], []
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- test_tag, standard_tag = [], []
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-
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- for index, (test_page, standard_page) in enumerate(zip(test_dropped_text_bboxs, standard_dropped_text_bboxs)):
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- # 初始化每个页面的结果列表
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- test_page_tag, standard_page_tag = [], []
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- test_page_bbox, standard_page_bbox = [], []
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-
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- for i, standard_bbox in enumerate(standard_page):
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- matched = False
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- for j, test_bbox in enumerate(test_page):
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- if bbox_offset(standard_bbox, test_bbox):
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- # 匹配成功，记录标签和边界框匹配结果
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- matched = True
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- test_page_tag.append(test_dropped_text_tag[index][j])
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- test_page_bbox.append(1)
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- break
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-
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- if not matched:
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- # 未匹配，记录'None'和边界框未匹配结果
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- test_page_tag.append('None')
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- test_page_bbox.append(0)
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-
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- # 标准边界框和标签总是被视为匹配的
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- standard_page_tag.append(standard_dropped_text_tag[index][i])
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- standard_page_bbox.append(1)
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-
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- # 处理可能的多删情况
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- handle_multi_deletion(test_page, test_page_tag, test_page_bbox, standard_page_tag, standard_page_bbox)
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-
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- # 合并当前页面的结果到整体结果中
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- test_tag.extend(test_page_tag)
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- standard_tag.extend(standard_page_tag)
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- test_text_bbox.extend(test_page_bbox)
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- standard_text_bbox.extend(standard_page_bbox)
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-
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- # 计算和返回匹配指标
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- if not standard_text_bbox or not test_text_bbox:
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- # print("警告：边界框列表为空，跳过性能指标的计算。")
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- text_block_report = {
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- 'accuracy': np.nan,
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- 'precision': np.nan,
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- 'recall': np.nan,
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- 'f1_score': np.nan
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- }
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- else:
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- text_block_report = {
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- 'accuracy': metrics.accuracy_score(standard_text_bbox, test_text_bbox),
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- 'precision': metrics.precision_score(standard_text_bbox, test_text_bbox, zero_division=0),
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- 'recall': metrics.recall_score(standard_text_bbox, test_text_bbox, zero_division=0),
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- 'f1_score': metrics.f1_score(standard_text_bbox, test_text_bbox, zero_division=0)
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- }
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-
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- # 对于classification_report，确保至少有一个非'None'标签存在
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- labels = list(set(standard_tag) - {'None'})
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- if labels:
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- text_block_tag_report = classification_report(y_true=standard_tag, y_pred=test_tag, labels=labels, output_dict=True, zero_division=0)
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- # 删除不需要的平均值报告，以简化输出
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- text_block_tag_report.pop("macro avg", None)
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- text_block_tag_report.pop("weighted avg", None)
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- else:
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- # print("警告：无有效标签进行匹配，跳过标签匹配指标的计算。")
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- text_block_tag_report = {}
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-
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- return text_block_report, text_block_tag_report
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-
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-
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-
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-def handle_multi_deletion(test_page, test_page_tag, test_page_bbox, standard_page_tag, standard_page_bbox):
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- """
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- 处理多删情况，即测试页面的边界框或标签数量多于标准页面。
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- """
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- excess_count = len(test_page) + test_page_bbox.count(0) - len(standard_page_tag)
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- if excess_count > 0:
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- # 对于多出的项，将它们视为正确匹配的边界框，但标签视为'None'
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- test_page_bbox.extend([1] * excess_count)
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- standard_page_bbox.extend([0] * excess_count)
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- test_page_tag.extend(['None'] * excess_count)
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- standard_page_tag.extend(['None'] * excess_count)
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-
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-
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-def read_json_files(standard_file, test_file):
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- """
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- 读取JSON文件内容
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- """
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- with open(standard_file, 'r', encoding='utf-8') as sf:
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- pdf_json_standard = [json.loads(line) for line in sf]
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-
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- with open(test_file, 'r', encoding='utf-8') as tf:
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- pdf_json_test = [json.loads(line) for line in tf]
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-
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- json_standard_origin = pd.DataFrame(pdf_json_standard)
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- json_test = pd.DataFrame(pdf_json_test)
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-
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- return json_standard_origin, json_test
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-
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-
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-def merge_json_data(json_test_df, json_standard_df):
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- """
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- 基于ID合并测试和标准数据集，并返回合并后的数据及存在性检查结果。
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-
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- 参数:
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- - json_test_df: 测试数据的DataFrame。
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- - json_standard_df: 标准数据的DataFrame。
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|
|
-
|
|
|
- 返回:
|
|
|
- - inner_merge: 内部合并的DataFrame，包含匹配的数据行。
|
|
|
- - standard_exist: 标准数据存在性的Series。
|
|
|
- - test_exist: 测试数据存在性的Series。
|
|
|
- """
|
|
|
- test_data = json_test_df[['id', 'mid_json']].drop_duplicates(subset='id', keep='first').reset_index(drop=True)
|
|
|
- standard_data = json_standard_df[['id', 'mid_json', 'pass_label']].drop_duplicates(subset='id', keep='first').reset_index(drop=True)
|
|
|
-
|
|
|
- outer_merge = pd.merge(test_data, standard_data, on='id', how='outer')
|
|
|
- outer_merge.columns = ['id', 'test_mid_json', 'standard_mid_json', 'pass_label']
|
|
|
-
|
|
|
- standard_exist = outer_merge.standard_mid_json.notnull()
|
|
|
- test_exist = outer_merge.test_mid_json.notnull()
|
|
|
-
|
|
|
- inner_merge = pd.merge(test_data, standard_data, on='id', how='inner')
|
|
|
- inner_merge.columns = ['id', 'test_mid_json', 'standard_mid_json', 'pass_label']
|
|
|
-
|
|
|
- return inner_merge, standard_exist, test_exist
|
|
|
-
|
|
|
-
|
|
|
-def process_equations_and_blocks(json_data):
|
|
|
- """
|
|
|
- 处理JSON数据，提取公式、文本块、图片块和表格块的边界框和文本信息。
|
|
|
-
|
|
|
- 参数:
|
|
|
- - json_data: 列表，包含标准文档或测试文档的JSON数据。
|
|
|
-
|
|
|
- 返回:
|
|
|
- - 字典，包含处理后的数据。
|
|
|
- """
|
|
|
- equations_bboxs = {"inline": [], "interline": []}
|
|
|
- equations_texts = {"inline": [], "interline": []}
|
|
|
- dropped_bboxs = {"text": [], "image": [], "table": []}
|
|
|
- dropped_tags = {"text": []}
|
|
|
- para_texts = []
|
|
|
- para_nums = []
|
|
|
- preproc_nums = []
|
|
|
-
|
|
|
-
|
|
|
- for i in json_data:
|
|
|
- mid_json = pd.DataFrame(i).iloc[:,:-1]
|
|
|
- page_data = {
|
|
|
- "equations_bboxs_list": {"inline": [], "interline": []},
|
|
|
- "equations_texts_list": {"inline": [], "interline": []},
|
|
|
- "dropped_bboxs_list": {"text": [], "image": [], "table": []},
|
|
|
- "dropped_tags_list": {"text": []},
|
|
|
- "para_texts_list": [],
|
|
|
- "para_nums_list": [],
|
|
|
- "preproc_nums_list":[]
|
|
|
- }
|
|
|
-
|
|
|
- for eq_type in ["inline", "interline"]:
|
|
|
- for equations in mid_json.loc[f"{eq_type}_equations", :]:
|
|
|
- bboxs = [eq['bbox'] for eq in equations]
|
|
|
- texts = [eq['latex_text'] for eq in equations]
|
|
|
- page_data["equations_bboxs_list"][eq_type].append(bboxs)
|
|
|
- page_data["equations_texts_list"][eq_type].append(texts)
|
|
|
-
|
|
|
- equations_bboxs["inline"].append(page_data["equations_bboxs_list"]["inline"])
|
|
|
- equations_bboxs["interline"].append(page_data["equations_bboxs_list"]["interline"])
|
|
|
- equations_texts["inline"].append(page_data["equations_texts_list"]["inline"])
|
|
|
- equations_texts["interline"].append(page_data["equations_texts_list"]["interline"])
|
|
|
-
|
|
|
-
|
|
|
- # 提取丢弃的文本块信息
|
|
|
- for dropped_text_blocks in mid_json.loc['droped_text_block',:]:
|
|
|
- bboxs, tags = [], []
|
|
|
- for block in dropped_text_blocks:
|
|
|
- bboxs.append(block['bbox'])
|
|
|
- tags.append(block.get('tag', 'None'))
|
|
|
-
|
|
|
- page_data["dropped_bboxs_list"]["text"].append(bboxs)
|
|
|
- page_data["dropped_tags_list"]["text"].append(tags)
|
|
|
-
|
|
|
- dropped_bboxs["text"].append(page_data["dropped_bboxs_list"]["text"])
|
|
|
- dropped_tags["text"].append(page_data["dropped_tags_list"]["text"])
|
|
|
-
|
|
|
-
|
|
|
-
|
|
|
- # 同时处理删除的图片块和表格块
|
|
|
- for block_type in ['image', 'table']:
|
|
|
- # page_blocks_list = []
|
|
|
- for blocks in mid_json.loc[f'droped_{block_type}_block', :]:
|
|
|
- # 如果是标准数据，直接添加整个块的列表
|
|
|
- page_data["dropped_bboxs_list"][block_type].append(blocks)
|
|
|
-
|
|
|
-
|
|
|
- # 将当前页面的块边界框列表添加到结果字典中
|
|
|
- dropped_bboxs['image'].append(page_data["dropped_bboxs_list"]['image'])
|
|
|
- dropped_bboxs['table'].append(page_data["dropped_bboxs_list"]['table'])
|
|
|
-
|
|
|
-
|
|
|
- # 处理段落
|
|
|
- for para_blocks in mid_json.loc['para_blocks', :]:
|
|
|
- page_data["para_nums_list"].append(len(para_blocks)) # 计算段落数
|
|
|
- for para_block in para_blocks:
|
|
|
- page_data["para_texts_list"].append(para_block['text'])
|
|
|
-
|
|
|
- for preproc_blocks in mid_json.loc['preproc_blocks', :]:
|
|
|
- numbers=[]
|
|
|
- for preproc_block in preproc_blocks:
|
|
|
- numbers.append(preproc_block['number'])
|
|
|
-
|
|
|
- page_data["preproc_nums_list"].append(numbers)
|
|
|
-
|
|
|
-
|
|
|
-
|
|
|
- para_texts.append(page_data["para_texts_list"])
|
|
|
- para_nums.append(page_data["para_nums_list"])
|
|
|
- preproc_nums.append(page_data["preproc_nums_list"])
|
|
|
-
|
|
|
-
|
|
|
- return {
|
|
|
- "equations_bboxs": equations_bboxs,
|
|
|
- "equations_texts": equations_texts,
|
|
|
- "dropped_bboxs": dropped_bboxs,
|
|
|
- "dropped_tags": dropped_tags,
|
|
|
- "para_texts": para_texts,
|
|
|
- "para_nums": para_nums,
|
|
|
- "preproc_nums": preproc_nums
|
|
|
- }
|
|
|
-
|
|
|
-
|
|
|
-def consolidate_data(test_data, standard_data, key_path):
|
|
|
- """
|
|
|
- Consolidates data from test and standard datasets based on the provided key path.
|
|
|
-
|
|
|
- :param test_data: Dictionary containing the test dataset.
|
|
|
- :param standard_data: Dictionary containing the standard dataset.
|
|
|
- :param key_path: List of keys leading to the desired data within the dictionaries.
|
|
|
- :return: List containing all items from both test and standard data at the specified key path.
|
|
|
- """
|
|
|
- # Initialize an empty list to hold the consolidated data
|
|
|
- overall_data_standard = []
|
|
|
- overall_data_test = []
|
|
|
-
|
|
|
- # Helper function to recursively navigate through the dictionaries based on the key path
|
|
|
- def extract_data(source_data, keys):
|
|
|
- for key in keys[:-1]:
|
|
|
- source_data = source_data.get(key, {})
|
|
|
- return source_data.get(keys[-1], [])
|
|
|
-
|
|
|
- for data in extract_data(standard_data, key_path):
|
|
|
- # 假设每个 single_table_tags 已经是一个列表，直接将它的元素添加到总列表中
|
|
|
- overall_data_standard.extend(data)
|
|
|
-
|
|
|
- for data in extract_data(test_data, key_path):
|
|
|
- overall_data_test.extend(data)
|
|
|
- # Extract and extend the overall data list with items from both test and standard datasets
|
|
|
-
|
|
|
-
|
|
|
- return overall_data_standard, overall_data_test
|
|
|
-
|
|
|
-
|
|
|
-def calculate_metrics(inner_merge, json_test, json_standard, json_standard_origin):
|
|
|
- """
|
|
|
- 计算指标
|
|
|
- """
|
|
|
- # 创建ID到file_id的映射
|
|
|
- id_to_file_id_map = pd.Series(json_standard_origin.file_id.values, index=json_standard_origin.id).to_dict()
|
|
|
-
|
|
|
- # 处理标准数据和测试数据
|
|
|
- process_data_standard = process_equations_and_blocks(json_standard)
|
|
|
- process_data_test = process_equations_and_blocks(json_test)
|
|
|
-
|
|
|
- # 从inner_merge中筛选出pass_label为'yes'的数据
|
|
|
- test_para_text = np.asarray(process_data_test['para_texts'], dtype=object)[inner_merge['pass_label'] == 'yes']
|
|
|
- standard_para_text = np.asarray(process_data_standard['para_texts'], dtype=object)[inner_merge['pass_label'] == 'yes']
|
|
|
- ids_yes = inner_merge['id'][inner_merge['pass_label'] == 'yes'].tolist()
|
|
|
-
|
|
|
- pdf_dis = {}
|
|
|
- pdf_bleu = {}
|
|
|
-
|
|
|
- # 对pass_label为'yes'的数据计算编辑距离和BLEU得分
|
|
|
- for idx, (a, b, id) in enumerate(zip(test_para_text, standard_para_text, ids_yes)):
|
|
|
- a1 = ''.join(a)
|
|
|
- b1 = ''.join(b)
|
|
|
- pdf_dis[id] = Levenshtein_Distance(a, b)
|
|
|
- pdf_bleu[id] = sentence_bleu([a1], b1)
|
|
|
-
|
|
|
-
|
|
|
- result_dict = {}
|
|
|
- acc_para=[]
|
|
|
-
|
|
|
-
|
|
|
-
|
|
|
-
|
|
|
- # 对所有数据计算其他指标
|
|
|
- for index, id_value in enumerate(inner_merge['id'].tolist()):
|
|
|
- result = {}
|
|
|
-
|
|
|
- # 增加file_id到结果中
|
|
|
- file_id = id_to_file_id_map.get(id_value, "Unknown")
|
|
|
- result['file_id'] = file_id
|
|
|
-
|
|
|
-
|
|
|
-
|
|
|
- # 根据id判断是否需要计算pdf_dis和pdf_bleu
|
|
|
- if id_value in ids_yes:
|
|
|
- result['pdf_dis'] = pdf_dis[id_value]
|
|
|
- result['pdf_bleu'] = pdf_bleu[id_value]
|
|
|
-
|
|
|
- # 阅读顺序编辑距离的均值
|
|
|
- preproc_num_dis=[]
|
|
|
- for a,b in zip(process_data_test['preproc_nums'][index],process_data_standard['preproc_nums'][index]):
|
|
|
- preproc_num_dis.append(Levenshtein_Distance(a,b))
|
|
|
- result['阅读顺序编辑距离']=np.mean(preproc_num_dis)
|
|
|
-
|
|
|
-
|
|
|
- # 计算分段准确率
|
|
|
- single_test_para_num = np.array(process_data_test['para_nums'][index])
|
|
|
- single_standard_para_num = np.array(process_data_standard['para_nums'][index])
|
|
|
- acc_para.append(np.mean(single_test_para_num == single_standard_para_num))
|
|
|
-
|
|
|
- result['分段准确率'] = acc_para[index]
|
|
|
-
|
|
|
- # 行内公式准确率和编辑距离、bleu
|
|
|
- result['行内公式准确率'] = bbox_match_indicator_general(
|
|
|
- process_data_test["equations_bboxs"]["inline"][index],
|
|
|
- process_data_standard["equations_bboxs"]["inline"][index])
|
|
|
-
|
|
|
- result['行内公式编辑距离'], result['行内公式bleu'] = equations_indicator(
|
|
|
- process_data_test["equations_bboxs"]["inline"][index],
|
|
|
- process_data_standard["equations_bboxs"]["inline"][index],
|
|
|
- process_data_test["equations_texts"]["inline"][index],
|
|
|
- process_data_standard["equations_texts"]["inline"][index])
|
|
|
-
|
|
|
- # 行间公式准确率和编辑距离、bleu
|
|
|
- result['行间公式准确率'] = bbox_match_indicator_general(
|
|
|
- process_data_test["equations_bboxs"]["interline"][index],
|
|
|
- process_data_standard["equations_bboxs"]["interline"][index])
|
|
|
-
|
|
|
- result['行间公式编辑距离'], result['行间公式bleu'] = equations_indicator(
|
|
|
- process_data_test["equations_bboxs"]["interline"][index],
|
|
|
- process_data_standard["equations_bboxs"]["interline"][index],
|
|
|
- process_data_test["equations_texts"]["interline"][index],
|
|
|
- process_data_standard["equations_texts"]["interline"][index])
|
|
|
-
|
|
|
- # 丢弃文本准确率，丢弃文本标签准确率
|
|
|
- result['丢弃文本准确率'], result['丢弃文本标签准确率'] = bbox_match_indicator_dropped_text_block(
|
|
|
- process_data_test["dropped_bboxs"]["text"][index],
|
|
|
- process_data_standard["dropped_bboxs"]["text"][index],
|
|
|
- process_data_standard["dropped_tags"]["text"][index],
|
|
|
- process_data_test["dropped_tags"]["text"][index])
|
|
|
-
|
|
|
- # 丢弃图片准确率
|
|
|
- result['丢弃图片准确率'] = bbox_match_indicator_general(
|
|
|
- process_data_test["dropped_bboxs"]["image"][index],
|
|
|
- process_data_standard["dropped_bboxs"]["image"][index])
|
|
|
-
|
|
|
- # 丢弃表格准确率
|
|
|
- result['丢弃表格准确率'] = bbox_match_indicator_general(
|
|
|
- process_data_test["dropped_bboxs"]["table"][index],
|
|
|
- process_data_standard["dropped_bboxs"]["table"][index])
|
|
|
-
|
|
|
-
|
|
|
- # 将结果存入result_dict
|
|
|
- result_dict[id_value] = result
|
|
|
-
|
|
|
- return result_dict
|
|
|
-
|
|
|
-
|
|
|
-def overall_calculate_metrics(inner_merge, json_test, json_standard,standard_exist, test_exist):
|
|
|
- """
|
|
|
- 计算整体指标：包括准确性、精确度、召回率、F1分数以及不同方面的详细指标。
|
|
|
-
|
|
|
- 参数:
|
|
|
- - inner_merge: 合并后的内部数据，包含测试和标准数据的合并结果。
|
|
|
- - json_test: 测试数据的JSON格式。
|
|
|
- - json_standard: 标准数据的JSON格式。
|
|
|
- - standard_exist: 标准存在的标签数据。
|
|
|
- - test_exist: 测试存在的标签数据。
|
|
|
-
|
|
|
- 返回值:
|
|
|
- - overall_report: 包含各种指标的字典。
|
|
|
- """
|
|
|
-
|
|
|
- # 处理标准数据和测试数据，提取方程式和块
|
|
|
- process_data_standard = process_equations_and_blocks(json_standard)
|
|
|
- process_data_test = process_equations_and_blocks(json_test)
|
|
|
-
|
|
|
- # 初始化整体报告，并计算基础指标
|
|
|
- overall_report = {}
|
|
|
- overall_report['accuracy']=metrics.accuracy_score(standard_exist,test_exist)
|
|
|
- overall_report['precision']=metrics.precision_score(standard_exist,test_exist)
|
|
|
- overall_report['recall']=metrics.recall_score(standard_exist,test_exist)
|
|
|
- overall_report['f1_score']=metrics.f1_score(standard_exist,test_exist)
|
|
|
- overall_report
|
|
|
-
|
|
|
- # 提取通过标签的数据，并计算编辑距离和BLEU得分
|
|
|
- test_para_text = np.asarray(process_data_test['para_texts'], dtype=object)[inner_merge['pass_label'] == 'yes']
|
|
|
- standard_para_text = np.asarray(process_data_standard['para_texts'], dtype=object)[inner_merge['pass_label'] == 'yes']
|
|
|
- ids_yes = inner_merge['id'][inner_merge['pass_label'] == 'yes'].tolist()
|
|
|
-
|
|
|
- pdf_dis = {}
|
|
|
- pdf_bleu = {}
|
|
|
-
|
|
|
- for idx,(a, b, id) in enumerate(zip(test_para_text, standard_para_text, ids_yes)):
|
|
|
- a1 = ''.join(a)
|
|
|
- b1 = ''.join(b)
|
|
|
- pdf_dis[id] = Levenshtein_Distance(a, b)
|
|
|
- pdf_bleu[id] = sentence_bleu([a1], b1)
|
|
|
-
|
|
|
- overall_report['pdf间的平均编辑距离'] = np.mean(list(pdf_dis.values()))
|
|
|
- overall_report['pdf间的平均bleu'] = np.mean(list(pdf_bleu.values()))
|
|
|
-
|
|
|
- # 合并数据中的方程式bbox和inline数据
|
|
|
- overall_equations_bboxs_inline_standard,overall_equations_bboxs_inline_test = consolidate_data(process_data_test, process_data_standard, ["equations_bboxs", "inline"])
|
|
|
-
|
|
|
- # 合并数据中的方程式文本和inline数据
|
|
|
- overall_equations_texts_inline_standard,overall_equations_texts_inline_test = consolidate_data(process_data_test, process_data_standard, ["equations_texts", "inline"])
|
|
|
-
|
|
|
- # 合并数据中的方程式bbox和interline数据
|
|
|
- overall_equations_bboxs_interline_standard,overall_equations_bboxs_interline_test = consolidate_data(process_data_test, process_data_standard, ["equations_bboxs", "interline"])
|
|
|
-
|
|
|
- # 合并数据中的方程式文本和interline数据
|
|
|
- overall_equations_texts_interline_standard,overall_equations_texts_interline_test = consolidate_data(process_data_test, process_data_standard, ["equations_texts", "interline"])
|
|
|
-
|
|
|
- # 合并丢弃的bbox和text数据
|
|
|
- overall_dropped_bboxs_text_standard,overall_dropped_bboxs_text_test = consolidate_data(process_data_test, process_data_standard, ["dropped_bboxs","text"])
|
|
|
-
|
|
|
- # 合并丢弃的tags和text数据
|
|
|
- overall_dropped_tags_text_standard,overall_dropped_tags_text_test = consolidate_data(process_data_test, process_data_standard, ["dropped_tags","text"])
|
|
|
-
|
|
|
- # 合并丢弃的bbox和image数据
|
|
|
- overall_dropped_bboxs_image_standard,overall_dropped_bboxs_image_test = consolidate_data(process_data_test, process_data_standard, ["dropped_bboxs","image"])
|
|
|
-
|
|
|
- # 合并丢弃的bbox和table数据
|
|
|
- overall_dropped_bboxs_table_standard,overall_dropped_bboxs_table_test=consolidate_data(process_data_test, process_data_standard,["dropped_bboxs","table"])
|
|
|
-
|
|
|
- # 合并阅读顺序的编辑距离
|
|
|
- overall_preproc_standard,overall_preproc_test = consolidate_data(process_data_test, process_data_standard, ["preproc_nums"])
|
|
|
-
|
|
|
- # 计算测试和标准数据的段落数量
|
|
|
- para_nums_test = process_data_test['para_nums']
|
|
|
- para_nums_standard=process_data_standard['para_nums']
|
|
|
- overall_para_nums_standard = [item for sublist in para_nums_standard for item in (sublist if isinstance(sublist, list) else [sublist])]
|
|
|
- overall_para_nums_test = [item for sublist in para_nums_test for item in (sublist if isinstance(sublist, list) else [sublist])]
|
|
|
-
|
|
|
-
|
|
|
- preproc_num_dis=[]
|
|
|
- for a,b in zip(overall_preproc_standard,overall_preproc_test):
|
|
|
- preproc_num_dis.append(Levenshtein_Distance(a,b))
|
|
|
- overall_report['阅读顺序编辑距离']=np.mean(preproc_num_dis)
|
|
|
-
|
|
|
- # 计算段落匹配准确性
|
|
|
- test_para_num=np.array(overall_para_nums_test)
|
|
|
- standard_para_num=np.array(overall_para_nums_standard)
|
|
|
- acc_para=np.mean(test_para_num==standard_para_num)
|
|
|
-
|
|
|
- overall_report['分段准确率'] = acc_para
|
|
|
-
|
|
|
- # 计算并更新报告中的各种指标
|
|
|
- overall_report['行内公式准确率'] = bbox_match_indicator_general(
|
|
|
- overall_equations_bboxs_inline_test,
|
|
|
- overall_equations_bboxs_inline_standard)
|
|
|
-
|
|
|
- overall_report['行内公式编辑距离'], overall_report['行内公式bleu'] = equations_indicator(
|
|
|
- overall_equations_bboxs_inline_test,
|
|
|
- overall_equations_bboxs_inline_standard,
|
|
|
- overall_equations_texts_inline_test,
|
|
|
- overall_equations_texts_inline_standard)
|
|
|
-
|
|
|
- overall_report['行间公式准确率'] = bbox_match_indicator_general(
|
|
|
- overall_equations_bboxs_interline_test,
|
|
|
- overall_equations_bboxs_interline_standard)
|
|
|
-
|
|
|
- overall_report['行间公式编辑距离'], overall_report['行间公式bleu'] = equations_indicator(
|
|
|
- overall_equations_bboxs_interline_test,
|
|
|
- overall_equations_bboxs_interline_standard,
|
|
|
- overall_equations_texts_interline_test,
|
|
|
- overall_equations_texts_interline_standard)
|
|
|
-
|
|
|
- overall_report['丢弃文本准确率'], overall_report['丢弃文本标签准确率'] = bbox_match_indicator_dropped_text_block(
|
|
|
- overall_dropped_bboxs_text_test,
|
|
|
- overall_dropped_bboxs_text_standard,
|
|
|
- overall_dropped_tags_text_standard,
|
|
|
- overall_dropped_tags_text_test)
|
|
|
-
|
|
|
- overall_report['丢弃图片准确率'] = bbox_match_indicator_general(
|
|
|
- overall_dropped_bboxs_image_test,
|
|
|
- overall_dropped_bboxs_image_standard)
|
|
|
-
|
|
|
- overall_report['丢弃表格准确率'] = bbox_match_indicator_general(
|
|
|
- overall_dropped_bboxs_table_test,
|
|
|
- overall_dropped_bboxs_table_standard)
|
|
|
-
|
|
|
- return overall_report
|
|
|
-
|
|
|
-
|
|
|
-
|
|
|
-def check_json_files_in_zip_exist(zip_file_path, standard_json_path_in_zip, test_json_path_in_zip):
|
|
|
- """
|
|
|
- 检查ZIP文件中是否存在指定的JSON文件
|
|
|
- """
|
|
|
- with zipfile.ZipFile(zip_file_path, 'r') as z:
|
|
|
- # 获取ZIP文件中所有文件的列表
|
|
|
- all_files_in_zip = z.namelist()
|
|
|
- # 检查标准文件和测试文件是否都在ZIP文件中
|
|
|
- if standard_json_path_in_zip not in all_files_in_zip or test_json_path_in_zip not in all_files_in_zip:
|
|
|
- raise FileNotFoundError("One or both of the required JSON files are missing from the ZIP archive.")
|
|
|
-
|
|
|
-def read_json_files_from_streams(standard_file_stream, test_file_stream):
|
|
|
- """
|
|
|
- 从文件流中读取JSON文件内容
|
|
|
- """
|
|
|
- pdf_json_standard = [json.loads(line) for line in standard_file_stream]
|
|
|
- pdf_json_test = [json.loads(line) for line in test_file_stream]
|
|
|
-
|
|
|
- json_standard_origin = pd.DataFrame(pdf_json_standard)
|
|
|
- json_test_origin = pd.DataFrame(pdf_json_test)
|
|
|
-
|
|
|
- return json_standard_origin, json_test_origin
|
|
|
-
|
|
|
-
|
|
|
-def read_json_files_from_zip(zip_file_path, standard_json_path_in_zip, test_json_path_in_zip):
|
|
|
- """
|
|
|
- 从ZIP文件中读取两个JSON文件并返回它们的DataFrame
|
|
|
- """
|
|
|
- with zipfile.ZipFile(zip_file_path, 'r') as z:
|
|
|
- with z.open(standard_json_path_in_zip) as standard_file_stream, \
|
|
|
- z.open(test_json_path_in_zip) as test_file_stream:
|
|
|
-
|
|
|
- standard_file_text_stream = TextIOWrapper(standard_file_stream, encoding='utf-8')
|
|
|
- test_file_text_stream = TextIOWrapper(test_file_stream, encoding='utf-8')
|
|
|
-
|
|
|
- json_standard_origin, json_test_origin = read_json_files_from_streams(
|
|
|
- standard_file_text_stream, test_file_text_stream
|
|
|
- )
|
|
|
-
|
|
|
- return json_standard_origin, json_test_origin
|
|
|
-
|
|
|
-
|
|
|
-def merge_json_data(json_test_df, json_standard_df):
|
|
|
- """
|
|
|
- 基于ID合并测试和标准数据集，并返回合并后的数据及存在性检查结果。
|
|
|
-
|
|
|
- 参数:
|
|
|
- - json_test_df: 测试数据的DataFrame。
|
|
|
- - json_standard_df: 标准数据的DataFrame。
|
|
|
-
|
|
|
- 返回:
|
|
|
- - inner_merge: 内部合并的DataFrame，包含匹配的数据行。
|
|
|
- - standard_exist: 标准数据存在性的Series。
|
|
|
- - test_exist: 测试数据存在性的Series。
|
|
|
- """
|
|
|
- test_data = json_test_df[['id', 'mid_json']].drop_duplicates(subset='id', keep='first').reset_index(drop=True)
|
|
|
- standard_data = json_standard_df[['id', 'mid_json', 'pass_label']].drop_duplicates(subset='id', keep='first').reset_index(drop=True)
|
|
|
-
|
|
|
- outer_merge = pd.merge(test_data, standard_data, on='id', how='outer')
|
|
|
- outer_merge.columns = ['id', 'test_mid_json', 'standard_mid_json', 'pass_label']
|
|
|
-
|
|
|
- standard_exist = outer_merge.standard_mid_json.notnull()
|
|
|
- test_exist = outer_merge.test_mid_json.notnull()
|
|
|
-
|
|
|
- inner_merge = pd.merge(test_data, standard_data, on='id', how='inner')
|
|
|
- inner_merge.columns = ['id', 'test_mid_json', 'standard_mid_json', 'pass_label']
|
|
|
-
|
|
|
- return inner_merge, standard_exist, test_exist
|
|
|
-
|
|
|
-def generate_filename(base_path):
|
|
|
- """
|
|
|
- 生成带有当前时间戳的输出文件名。
|
|
|
- 参数:
|
|
|
- - base_path: 基础路径和文件名前缀。
|
|
|
- 返回:
|
|
|
- - 带有当前时间戳的完整输出文件名。
|
|
|
- """
|
|
|
- current_time = datetime.now().strftime('%Y-%m-%d_%H-%M-%S')
|
|
|
- return f"{base_path}_{current_time}.json"
|
|
|
-
|
|
|
-def save_results(data_dict, file_path):
|
|
|
- """
|
|
|
- 将数据字典保存为JSON文件至指定路径。
|
|
|
- 参数:
|
|
|
- - data_dict: 包含数据的字典。
|
|
|
- - file_path: 结果文件的保存路径，包括文件名。
|
|
|
- """
|
|
|
- with open(file_path, 'w', encoding='utf-8') as f:
|
|
|
- json.dump(data_dict, f, ensure_ascii=False, indent=4)
|
|
|
- print(f"结果已经保存到文件：{file_path}")
|
|
|
-
|
|
|
-
|
|
|
-
|
|
|
-def upload_to_s3(file_path, bucket_name, s3_directory, AWS_ACCESS_KEY, AWS_SECRET_KEY, END_POINT_URL):
|
|
|
- """
|
|
|
- 上传文件到Amazon S3
|
|
|
- """
|
|
|
- # 创建S3客户端
|
|
|
- s3 = boto3.client('s3', aws_access_key_id=AWS_ACCESS_KEY, aws_secret_access_key=AWS_SECRET_KEY, endpoint_url=END_POINT_URL)
|
|
|
- try:
|
|
|
- # 从文件路径中提取文件名
|
|
|
- file_name = os.path.basename(file_path)
|
|
|
-
|
|
|
- # 创建S3对象键，将s3_directory和file_name连接起来
|
|
|
- s3_object_key = f"{s3_directory}/{file_name}" # 使用斜杠直接连接
|
|
|
-
|
|
|
- # 上传文件到S3
|
|
|
- s3.upload_file(file_path, bucket_name, s3_object_key)
|
|
|
-
|
|
|
- print(f"文件 {file_path} 成功上传到S3存储桶 {bucket_name} 中的目录 {s3_directory}，文件名为 {file_name}")
|
|
|
- except FileNotFoundError:
|
|
|
- print(f"文件 {file_path} 未找到，请检查文件路径是否正确。")
|
|
|
- except NoCredentialsError:
|
|
|
- print("无法找到AWS凭证，请确认您的AWS访问密钥和密钥ID是否正确。")
|
|
|
- except ClientError as e:
|
|
|
- print(f"上传文件时发生错误：{e}")
|
|
|
-
|
|
|
-
|
|
|
-
|
|
|
-def compare_edit_distance(json_file, overall_report):
|
|
|
- with open(json_file, 'r',encoding='utf-8') as f:
|
|
|
- json_data = json.load(f)
|
|
|
-
|
|
|
- json_edit_distance = json_data['pdf间的平均编辑距离']
|
|
|
-
|
|
|
- if overall_report['pdf间的平均编辑距离'] > json_edit_distance:
|
|
|
- return 0
|
|
|
- else:
|
|
|
- return 1
|
|
|
-
|
|
|
-def main(standard_file, test_file, zip_file, overall_path, base_data_path, badcase_path=None, s3_bucket_name=None, s3_file_directory=None,
|
|
|
- aws_access_key=None, aws_secret_key=None, end_point_url=None):
|
|
|
- """
|
|
|
- 主函数，执行整个评估流程。
|
|
|
-
|
|
|
- 参数:
|
|
|
- - standard_file: 标准文件的路径。
|
|
|
- - test_file: 测试文件的路径。
|
|
|
- - zip_file: 压缩包的路径的路径。
|
|
|
- - badcase_path: badcase文件的基础路径和文件名前缀（可选）。
|
|
|
- - overall_path: overall文件的基础路径和文件名前缀。
|
|
|
- - base_data_path: 基础数据路径。
|
|
|
- - s3_bucket_name: S3桶名称（可选）。
|
|
|
- - s3_file_directory: S3上的文件保存目录（可选）。
|
|
|
- - AWS_ACCESS_KEY, AWS_SECRET_KEY, END_POINT_URL: AWS访问凭证和端点URL（可选）。
|
|
|
- """
|
|
|
-
|
|
|
- # 检查文件是否存在
|
|
|
- check_json_files_in_zip_exist(zip_file, standard_file, test_file)
|
|
|
-
|
|
|
- # 读取JSON文件内容
|
|
|
- json_standard_origin, json_test_origin = read_json_files_from_zip(zip_file, standard_file, test_file)
|
|
|
-
|
|
|
- # 合并JSON数据
|
|
|
- inner_merge, standard_exist, test_exist = merge_json_data(json_test_origin, json_standard_origin)
|
|
|
-
|
|
|
- #计算总体指标
|
|
|
- overall_report_dict=overall_calculate_metrics(inner_merge, inner_merge['test_mid_json'], inner_merge['standard_mid_json'],standard_exist, test_exist)
|
|
|
- # 生成带时间戳的输出文件名
|
|
|
- if badcase_path:
|
|
|
- badcase_file = generate_filename(badcase_path)
|
|
|
- result_dict = result_dict = calculate_metrics(inner_merge, inner_merge['test_mid_json'], inner_merge['standard_mid_json'], json_standard_origin)
|
|
|
- save_results(result_dict, badcase_file)
|
|
|
-
|
|
|
- overall_file = generate_filename(overall_path)
|
|
|
- save_results(overall_report_dict, overall_file)
|
|
|
-
|
|
|
- result = compare_edit_distance(base_data_path, overall_report_dict)
|
|
|
-
|
|
|
- if all([s3_bucket_name, s3_file_directory, aws_access_key, aws_secret_key, end_point_url]):
|
|
|
- try:
|
|
|
- if badcase_path:
|
|
|
- upload_to_s3(badcase_file, s3_bucket_name, s3_file_directory, aws_access_key, aws_secret_key, end_point_url)
|
|
|
- upload_to_s3(overall_file, s3_bucket_name, s3_file_directory, aws_access_key, aws_secret_key, end_point_url)
|
|
|
- except Exception as e:
|
|
|
- print(f"上传到S3时发生错误: {e}")
|
|
|
-
|
|
|
- print(result)
|
|
|
- assert result == 1
|
|
|
-
|
|
|
-if __name__ == "__main__":
|
|
|
- parser = argparse.ArgumentParser(description="主函数，执行整个评估流程。")
|
|
|
- parser.add_argument('standard_file', type=str, help='标准文件的路径。')
|
|
|
- parser.add_argument('test_file', type=str, help='测试文件的路径。')
|
|
|
- parser.add_argument('zip_file', type=str, help='压缩包的路径。')
|
|
|
- parser.add_argument('overall_path', type=str, help='overall文件的基础路径和文件名前缀。')
|
|
|
- parser.add_argument('base_data_path', type=str, help='基准文件的基础路径和文件名前缀。')
|
|
|
- parser.add_argument('--badcase_path', type=str, default=None, help='badcase文件的基础路径和文件名前缀（可选）。')
|
|
|
- parser.add_argument('--s3_bucket_name', type=str, help='S3桶名称。', default=None)
|
|
|
- parser.add_argument('--s3_file_directory', type=str, help='S3上的文件保存目录。', default=None)
|
|
|
- parser.add_argument('--AWS_ACCESS_KEY', type=str, help='AWS访问密钥。', default=None)
|
|
|
- parser.add_argument('--AWS_SECRET_KEY', type=str, help='AWS秘密密钥。', default=None)
|
|
|
- parser.add_argument('--END_POINT_URL', type=str, help='AWS端点URL。', default=None)
|
|
|
-
|
|
|
- args = parser.parse_args()
|
|
|
-
|
|
|
- main(args.standard_file, args.test_file, args.zip_file, args.overall_path, args.base_data_path,
|
|
|
- badcase_path=args.badcase_path, s3_bucket_name=args.s3_bucket_name,
|
|
|
- s3_file_directory=args.s3_file_directory, aws_access_key=args.AWS_ACCESS_KEY,
|
|
|
- aws_secret_key=args.AWS_SECRET_KEY, end_point_url=args.END_POINT_URL)
|
quyuan